Web Apollo

 

The first instantaneous, collaborative genomic annotation editor available on the Web.

Web Apollo is designed to support geographically dispersed researchers, and the work of a distributed community is coordinated through automatic synchronization: all edits in one client are instantly pushed to all other clients, allowing users to see annotation updates from collaborators in real-time during the editing process.

There are no installation requirements for Annotators!

Web Apollo is a plug-in for JBrowse, adding User-created Annotations and DNA tracks to the familiar main window.

Try Web Apollo at our Public Demo, built with the genome of the honey bee (Apis mellifera).

Apollo On The Web

Web Apollo

 

Highlighted features from our latest release.

  • Ability to switch between isoforms, when editing meta data in the 'Information Editor'.
  • In addition to genes and pseudogenes, users can annotate ncRNAs (snRNA, snoRNA, tRNA, rRNA), miRNAs, repeat regions, and transposable elements; each annotation type has its own configuration of the ' Information Editor'.
  • Adding and updating PubMed IDs will prompt users with a publication title to confirm their submission.
  • Gene Ontology (GO) terms are supported and GO ID auto-completion has been incorporated.
  • History tracking with undo/redo functions is now available.
  • Users may set the start of translation for a transcript, or let the server determine automatically, and they may also mark the presence of 'readthrough stop' signals.
  • Users are now able to directly set an annotation to a specific state, choosing from the 'History' display.
  • Users may now access a 'History page' of recent changes.

 

Downloads

Download Web Apollo.

Documentation

Installation and user guides, instructions on Apollo Web API, and Tutorial at GMOD Summer School.